References

Abeyruwan, S., Vempati, U. D., Küçük-McGinty, H., Visser, U., Koleti, A., Mir, A., Sakurai, K., Chung, C., Bittker, J. A., Clemons, P. A., et al. (2014). Evolving BioAssay Ontology (BAO): modularization, integration and applications. Journal of Biomedical Semantics, 5(S1). https://doi.org/10.1186/2041-1480-5-S1-S5
Bateman, A., Martin, M. -J., Orchard, S., Magrane, M., Agivetova, R., Ahmad, S., Alpi, E., Bowler-Barnett, E. H., Britto, R., Bursteinas, B., Bye-A-Jee, H., Coetzee, R., Cukura, A., Da Silva, A., Denny, P., Dogan, T., Ebenezer, T. G., Fan, J., Castro, L. G., et al. (2021). Nucleic Acids Research, 49(D1). https://doi.org/10.1093/nar/gkaa1100
Balhoff, J., Brush, M., & Vasilevsky, N. NCIt OBO Edition. GitHub. Retrieved September 9, 2021, from https://github.com/NCI-Thesaurus/thesaurus-obo-edition
Beckett, D., Berners-Lee, T., Prud'hommeaux, E., & Carothers, G., Prud'hommeaux, E., & Carothers, G. (Eds.). (©2014). RDF 1.1 Turtle: Terse RDF Triple Language. W3C. Retrieved September 7, 2022, from https://www.w3.org/TR/turtle/
Beckett, D., Carothers, G., & Seaborne, A. (Eds.). (©2014). RDF 1.1 N-Triples: A line-based syntax for an RDF graph. W3C. Retrieved September 7, 2022, from https://www.w3.org/TR/n-triples/
Bolleman, J., Galgonek, J., Andrews, R., Mendvelso, K., Gaud, C., Martinát, D., Hoffmann, N., Morgat, A., Bansal, P., Aimo, L., et al. (2021). Fair Lipids paper. GitHub. Retrieved May 5, 2022, from https://github.com/elixir-europe/biohackathon-projects-2021/blob/FAIR_Lipids_paper/projects/6/PAPER.md
Birbeck, M., & McCarron, S. (Eds.). (©2010). CURIE Syntax 1.0. W3C. Retrieved May 5, 2022, from https://www.w3.org/TR/curie/
Brickley, D., & Guha, R. V. (Eds.). (©2014). RDF Schema 1.1. W3C. Retrieved September 9, 2021, from https://www.w3.org/TR/rdf-schema/
Cyganiak, R., Wood, D., & Lanthaler, M. (Eds.). (©2014). RDF 1.1 Concepts and Abstract Syntax. W3C. Retrieved January 18, 2021, from https://www.w3.org/TR/rdf11-concepts/
D'Arcus, B., & Giasson, F. (2016). BIBO (RDF). Dublin Core Metadata Inovation. Retrieved September 9, 2021, from https://www.dublincore.org/specifications/bibo/bibo/
DCMI Usage Board. (2020). DCMI Metadata Terms. Dublin Core Metadata Innovation. Retrieved September 9, 2021, from https://www.dublincore.org/specifications/dublin-core/dcmi-terms/
Dumontier, M., Baker, C. J. O., Baran, J., Callahan, A., Chepelev, L., Cruz-Toledo, J., Del Rio, N. R., Duck, G., Furlong, L. I., Keath, N., Klassen, D., McCusker, J. P., Queralt-Rosinach, N., Samwald, M., Villanueva-Rosales, N., Wilkinson, M. D., & Hoehndorf, R. (2014). The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. Journal of Biomedical Semantics, 5(1). https://doi.org/10.1186/2041-1480-5-14
Fu, G., Batchelor, C., Dumontier, M., Hastings, J., Willighagen, E., & Bolton, E. (2015). PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. Journal of Cheminformatics, 7(1). https://doi.org/10.1186/s13321-015-0084-4
Galgonek, J., & Vondrášek, J. (2021). IDSM ChemWebRDF: SPARQLing small-molecule datasets. Journal of Cheminformatics, 13(1). https://doi.org/10.1186/s13321-021-00515-1
Gandon, F., & Schreiber, G. (Eds.). (©2014). RDF 1.1 XML Syntax. W3C. Retrieved September 7, 2022, from https://www.w3.org/TR/rdf-syntax-grammar/
Gkoutos, G. V., Schofield, P. N., & Hoehndorf, R. (2012). The Units Ontology: a tool for integrating units of measurement in science. Database, 2012, bas033-bas033. https://doi.org/10.1093/database/bas033
Harris, S., & Seaborne, A. (Eds.). (©2013). SPARQL 1.1 Query Language. W3C. Retrieved May 3, 2022, from https://www.w3.org/TR/sparql11-query/
Hastings, J., Chepelev, L., Willighagen, E., Adams, N., Steinbeck, C., Dumontier, M., & Fraternali, F. (2011). The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web. PLoS ONE, 6(10). https://doi.org/10.1371/journal.pone.0025513
Hastings, J., Owen, G., Dekker, A., Ennis, M., Kale, N., Muthukrishnan, V., Turner, S., Swainston, N., Mendes, P., & Steinbeck, C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Research, 44(D1), D1214-D1219. https://doi.org/10.1093/nar/gkv1031
Jupp, S., Malone, J., Bolleman, J., Brandizi, M., Davies, M., Garcia, L., Gaulton, A., Gehant, S., Laibe, C., Redaschi, N., et al. (2014). The EBI RDF platform: linked open data for the life sciences. Bioinformatics, 30(9), 1338-1339. https://doi.org/10.1093/bioinformatics/btt765
Kinjo, A. R., Suzuki, H., Yamashita, R., Ikegawa, Y., Kudou, T., Igarashi, R., Kengaku, Y., Cho, H., Standley, D. M., Nakagawa, A., & Nakamura, H. (2011). Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. Nucleic Acids Research, 40(D1), D453-D460. https://doi.org/10.1093/nar/gkr811
Miles, A., & Bechofer, S. (Eds.). (©2009). SKOS Simple Knowledge Organization System Reference. W3C. Retrieved December 27, 2021, from https://www.w3.org/TR/skos-reference/
Peterson, D., Gao, S., Malhotra, A., Sperberg-McQueen, C. M., & Thompson, H. S. (Eds.). (©2012). W3C XML Schema Definition Language (XSD) 1.1 Part 2: Datatypes. W3C. Retrieved May 7, 2022, from https://www.w3.org/TR/xmlschema11-2/
Sauermann, L., & Cyganiak, R. (Eds.). (2008). Cool URIs for the Semantic Web. W3C. Retrieved April 15, 2022, from https://www.w3.org/TR/cooluris/
Schreiber, G., & Raimond, Y. (Eds.). (©2014). RDF 1.1 Primer. W3C. Retrieved September 7, 2022, from https://www.w3.org/TR/rdf11-primer/
Shotton, D., & Peroni, S. (2018). CiTO, the Citation Typing Ontology. SPAR Ontologies. Retrieved September 9, 2021, from https://sparontologies.github.io/cito/current/cito.html
Stoeckert, C., Arabandi, S., Boelling, C., Brochhausen, M., Brush, M., Ceusters, W., Ciccarese, P., Courtot, M., Dipert, R., Dumontier, M., et al. (2020). Information artifact ontology (IAO). GitHub. Retrieved September 9, 2021, from https://github.com/information-artifact-ontology/IAO/
Tan, S., Mungall, C., Vasilevsky, N., Matentzoglu, N., Osumi-Sutherland, D., Caron, A., reality, Dahdul, W., Blumberg, K., Balhoff, J., et al. (2021). PATO - the Phenotype And Trait Ontology. GitHub. Retrieved September 9, 2021, from https://github.com/pato-ontology/pato/
Torniai, C., Brush, M., Vasilevsky, N., Segerdell, E., Wilson, M., Johnson, T., Corday, K., Shaffer, C., & Haendel, M. (2011). Developing an Application Ontology for Biomedical Resource Annotation and Retrieval: Challenges and Lessons Learned. In ICBO-2011 International Conference on Biomedical Ontology (pp. 101-108). http://ceur-ws.org/Vol-833/paper14.pdf
Triplestore. (2022). Wikipedia: the free encyclopedia. Retrieved September 7, 2022, from https://en.wikipedia.org/wiki/Triplestore